With respect, it might be a WiFi issue and not the remote, or RuneAudio. I say this because this:
I have two Raspberry Pi 2's, one with a hat DAC+ and one with a DIGI+, with RuneAudio on one, Xbian on the other, side-by-side, WiFi dongles, Samsung Galaxy Prime with browser GIU, old Nexus Tablet w. RuneAudio App, HP EliteBook laptop. Both Xbian and RuneAudio sometimes (not always) suffer from communications dropped errors, and lose connection to their UI (unless on the local console). Xbian resets (sometimes in the middle of playing a video), or shows errors.
RuneAudio does not handle those kinds of problems the same way. At least not when the WiFi droputs happen. Adding MPD watchdog improved the web radio experience greatly, but RuneAudio GUI still gets "lost". No worse than Xbian, or Ubuntu Mate, but different symptoms. The more I use the Browser UI or the remote app, the more noticable it is.
As an aside, which Android remote do you have?
edit:
Using Bubble UPnP is the most annoying (or easiest to break), probably because it uses the network more extensively than a remote UI for Xbian or RuneAudio. Other than that, using RuneAudio as a UPnP renderer works like a charm....